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"title": "Define the modifications to other events, costs, utilities, or other items affected by the occurrence of the event", "topics": [ "add_reactevt" ] }, { "page": "add_tte", "title": "Define events and the initial event time", "topics": [ "add_tte" ] }, { "page": "adj_val", "title": "Adjusted Value Calculation", "topics": [ "adj_val" ] }, { "page": "ast_as_list", "title": "Transform a substituted expression to its Abstract Syntax Tree (AST) as a list", "topics": [ "ast_as_list" ] }, { "page": "ceac_des", "title": "Calculate the cost-effectiveness acceptability curve (CEAC) for a DES model with a PSA result", "topics": [ "ceac_des" ] }, { "page": "cond_dirichlet", "title": "Calculate conditional dirichlet values", "topics": [ "cond_dirichlet" ] }, { "page": "cond_mvn", "title": "Calculate conditional multivariate normal values", "topics": [ "cond_mvn" ] }, { "page": "create_indicators", "title": "Creates a vector of indicators (0 and 1) for sensitivity/DSA analysis", "topics": [ "create_indicators" ] }, { "page": "disc_cycle", "title": "Cycle discounting", "topics": [ "disc_cycle" ] }, { "page": "disc_cycle_v", "title": "Cycle discounting for vectors", "topics": [ "disc_cycle_v" ] }, { "page": "disc_instant", "title": "Calculate instantaneous discounted costs or qalys", "topics": [ "disc_instant" ] }, { "page": "disc_instant_v", "title": "Calculate instantaneous discounted costs or qalys for vectors", "topics": [ "disc_instant_v" ] }, { "page": "disc_ongoing", "title": "Calculate discounted costs and qalys between events", "topics": [ "disc_ongoing" ] }, { "page": "disc_ongoing_v", "title": "Calculate discounted costs and qalys between events for vectors", "topics": [ "disc_ongoing_v" ] }, { "page": "discrete_resource_clone", "title": "Clone independent discrete resources", "topics": [ "discrete_resource_clone" ] }, { "page": "draw_tte", "title": "Draw a time to event from a list of parametric survival functions", "topics": [ "draw_tte" ] }, { "page": "evpi_des", "title": "Calculate the Expected Value of Perfect Information (EVPI) for a DES model with a PSA result", "topics": [ "evpi_des" ] }, { "page": "extract_elements_from_list", "title": "Extracts items and events by looking into assignments, modify_event and new_event", "topics": [ "extract_elements_from_list" ] }, { "page": "extract_from_reactions", "title": "Extract all items and events and their interactions from the event reactions list", "topics": [ "extract_from_reactions" ] }, { "page": "extract_psa_result", "title": "Extract PSA results from a treatment", "topics": [ "extract_psa_result" ] }, { "page": "get_event", "title": "Get a specific event time", "topics": [ "get_event" ] }, { "page": "has_event", "title": "Check if a patient has a specific event in the queue", "topics": [ "has_event" ] }, { "page": "input_block", "title": "Build an input block for automatic parameter selection", "topics": [ "input_block" ] }, { "page": "luck_adj", "title": "Perform luck adjustment", "topics": [ "luck_adj" ] }, { "page": "modify_event", "title": "Modify or add events for a patient", "topics": [ "modify_event" ] }, { "page": "modify_item", "title": "Modify the value of existing items", "topics": [ "modify_item" ] }, { "page": "modify_item_seq", "title": "Modify the value of existing items", "topics": [ "modify_item_seq" ] }, { "page": "new_event", "title": "Add events to the queue for a patient", "topics": [ "new_event" ] }, { "page": "next_event", "title": "Get the next events in the queue", "topics": [ "next_event" ] }, { "page": "next_event_pt", "title": "Get the next events in the queue for a specific patient", "topics": [ "next_event_pt" ] }, { "page": "pcond_gompertz", "title": "Survival Probaility function for conditional Gompertz distribution (lower bound only)", "topics": [ "pcond_gompertz" ] }, { "page": "pick_psa", "title": "Helper function to create a list with random draws or whenever a series of functions needs to be called. Can be implemented within 'pick_val_v'.", "topics": [ "pick_psa" ] }, { "page": "pick_val_v", "title": "Select which values should be applied in the corresponding loop for several values (vector or list).", "topics": [ "pick_val_v" ] }, { "page": "pop_and_return_event", "title": "Pop and return the next event", "topics": [ "pop_and_return_event" ] }, { "page": "pop_event", "title": "Remove the next event from the queue", "topics": [ "pop_event" ] }, { "page": "qbeta_mse", "title": "Draw from a beta distribution based on mean and se (quantile)", "topics": [ "qbeta_mse" ] }, { "page": "qcond_exp", "title": "Conditional quantile function for exponential distribution", "topics": [ "qcond_exp" ] }, { "page": "qcond_gamma", "title": "Conditional quantile function for gamma distribution", "topics": [ "qcond_gamma" ] }, { "page": "qcond_gompertz", "title": "Quantile function for conditional Gompertz distribution (lower bound only)", "topics": [ "qcond_gompertz" ] }, { "page": "qcond_llogis", "title": "Conditional quantile function for loglogistic distribution", "topics": [ "qcond_llogis" ] }, { "page": "qcond_lnorm", "title": "Conditional quantile function for lognormal distribution", "topics": [ "qcond_lnorm" ] }, { "page": "qcond_norm", "title": "Conditional quantile function for normal distribution", "topics": [ "qcond_norm" ] }, { "page": "qcond_weibull", "title": "Conditional quantile function for weibull distribution", "topics": [ "qcond_weibull" ] }, { "page": "qcond_weibullPH", "title": "Conditional quantile function for WeibullPH (flexsurv)", "topics": [ "qcond_weibullPH" ] }, { "page": "qgamma_mse", "title": "Use quantiles from a gamma distribution based on mean and se", "topics": [ "qgamma_mse" ] }, { "page": "qtimecov", "title": "Draw time-to-event with time-dependent covariates and luck adjustment", "topics": [ "qtimecov" ] }, { "page": "queue_create", "title": "Create a New Event Queue", "topics": [ "queue_create" ] }, { "page": "queue_empty", "title": "Check if the event queue is empty", "topics": [ "queue_empty" ] }, { "page": "queue_size", "title": "Get the Size of the Event Queue", "topics": [ "queue_size" ] }, { "page": "random_stream", "title": "Creates an environment (similar to R6 class) of random uniform numbers to be drawn from", "topics": [ "random_stream" ] }, { "page": "rbeta_mse", "title": "Draw from a beta distribution based on mean and se", "topics": [ "rbeta_mse" ] }, { "page": "rcond_gompertz", "title": "Draw from a conditional Gompertz distribution (lower bound only)", "topics": [ "rcond_gompertz" ] }, { "page": "rcond_gompertz_lu", "title": "Draw from a conditional Gompertz distribution (lower and upper bound)", "topics": [ "rcond_gompertz_lu" ] }, { "page": "rdirichlet", "title": "Draw from a dirichlet distribution based on number of counts in transition. Adapted from brms::rdirichlet", "topics": [ "rdirichlet" ] }, { "page": "rdirichlet_prob", "title": "Draw from a dirichlet distribution based on mean transition probabilities and standard errors", "topics": [ "rdirichlet_prob" ] }, { "page": "release", "title": "Release a discrete resource", "topics": [ "release" ] }, { "page": "release_all", "title": "Release multiple discrete resources", "topics": [ "release_all" ] }, { "page": "release_all_if_using", "title": "Release multiple discrete resources (using only)", "topics": [ "release_all_if_using" ] }, { "page": "remove_event", "title": "Remove events for a patient", "topics": [ "remove_event" ] }, { "page": "replicate_profiles", "title": "Replicate profiles data.frame", "topics": [ "replicate_profiles" ] }, { "page": "resource_discrete", "title": "Create a discrete resource", "topics": [ "resource_discrete" ] }, { "page": "rgamma_mse", "title": "Draw from a gamma distribution based on mean and se", "topics": [ "rgamma_mse" ] }, { "page": "rpoisgamma", "title": "Draw time to event (tte) from a Poisson or Poisson-Gamma (PG) Mixture/Negative Binomial (NB) Process", "topics": [ "rpoisgamma" ] }, { "page": "rpoisgamma_rcpp", "title": "Draw time to event (tte) from a Poisson or Poisson-Gamma (PG) Mixture/Negative Binomial (NB) Process using C++", "topics": [ "rpoisgamma_rcpp" ] }, { "page": "run_sim", "title": "Run the simulation", "topics": [ "run_sim" ] }, { "page": "run_sim_parallel", "title": "Run simulations in parallel mode (at the simulation level)", "topics": [ "run_sim_parallel" ] }, { "page": "seize", "title": "Seize a discrete resource", "topics": [ "seize" ] }, { "page": "seize_all", "title": "Seize multiple discrete resources atomically", "topics": [ "seize_all" ] }, { "page": "sens_iterator", "title": "Create an iterator based on sens of the current iteration within a scenario (DSA)", "topics": [ "sens_iterator" ] }, { "page": "shared_decr", "title": "Decrement a shared counter", "topics": [ 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